DR. Philipp Heuser
Helmholtz Imaging Support Unit Hamburg
Research and Innovation in Computing - RIC
DESY IT
D-22607 Hamburg
Head of the Helmholtz Imaging Support Unit at DESY Hamburg. Background in computational structural biology, pattern recognition, artificial intelligence, convolutional neural networks and cloud computing.
Publications
Demonstration of full-scale spatiotemporal diagnostics of solid-density plasmas driven by an ultra-short relativistic laser pulse using an X-ray free-electron laser
Huang L, Šmíd M, Yang L, Humphries O, Hagemann J, Engler T, Pan X, Cui Y, Kluge T, Aguilar R, Baehtz C, Brambrink E, Eren E, Falk K, Laso Garcia A, Göde S, Gutt C, Hassan M, Heuser P, Höppner H, Kozlova M, Lu W, Metzkes-Ng J, Masruri M, Mishchenko M, Nakatsutsumi M, Ota M, Öztürk Ö, Pelka A, Prencipe I, Preston T, Randolph L, Rehwald M, Schlenvoigt H, Schramm U, Schwinkendorf J, Starke S, Štefaníková R, Thiessenhusen E, Toncian M, Toncian T, Vorberger J, Zastrau U, Zeil K, Cowan T - Matter and Radiation at Extremes - 2025
Characterizing sea ice melt pond fraction and geometry in relation to surface morphology
Buth L, Krumpen T, Neckel N, Webster M, Birnbaum G, Fuchs N, Heuser P, Johannsen O, Haas C - 2025
The Helmholtz Model Zoo: A Cloud-Based Platform for AI Model Sharing and Inference in the Helmholtz Association
Werners H, Eren E, Fuhrmann P, Heuser P - Zenodo - 2025
Machine learning for the reconstruction and analysis of synchrotron-radiation tomography data
Moosmann J, Ahrens J, Irvine S, Wong T, Lucas C, Beckmann F, Hammel J, Wieland F, Zeller-Plumhoff B, Heuser P - Developments in X-Ray Tomography XV - 2024
PickYOLO: Fast deep learning particle detector for annotation of cryo electron tomograms
Genthe E, Miletic S, Tekkali I, Hennell James R, Marlovits T, Heuser P - Journal of Structural Biology - 2023
The CCP4 suite: integrative software for macromolecular crystallography
Agirre J, Atanasova M, Bagdonas H, Ballard C, Baslé A, Beilsten-Edmands J, Borges R, Brown D, Burgos-Mármol J, Berrisford J, Bond P, Caballero I, Catapano L, Chojnowski G, Cook A, Cowtan K, Croll T, Debreczeni J, Devenish N, Dodson E, Drevon T, Emsley P, Evans G, Evans P, Fando M, Foadi J, Fuentes-Montero L, Garman E, Gerstel M, Gildea R, Hatti K, Hekkelman M, Heuser P, Hoh S, Hough M, Jenkins H, Jiménez E, Joosten R, Keegan R, Keep N, Krissinel E, Kolenko P, Kovalevskiy O, Lamzin V, Lawson D, Lebedev A, Leslie A, Lohkamp B, Long F, Malý M, McCoy A, McNicholas S, Medina A, Millán C, Murray J, Murshudov G, Nicholls R, Noble M, Oeffner R, Pannu N, Parkhurst J, Pearce N, Pereira J, Perrakis A, Powell H, Read R, Rigden D, Rochira W, Sammito M, Sánchez Rodríguez F, Sheldrick G, Shelley K, Simkovic F, Simpkin A, Skubak P, Sobolev E, Steiner R, Stevenson K, Tews I, Thomas J, Thorn A, Valls J, Uski V, Usón I, Vagin A, Velankar S, Vollmar M, Walden H, Waterman D, Wilson K, Winn M, Winter G, Wojdyr M, Yamashita K - Acta Crystallographica Section D Structural Biology - 2023
Artificial intelligence for synchrotron-radiation tomography
Moosmann J, Kazimi B, Heuser P, Schlünzen F, Baltruschat I, Kakavand S, Lucas C, Bruns S, Zeller-Plumhoff B, Wieland F, Cwieka H, Flenner S, Greving I, Hammel J, Beckmann F - Emerging Topics in Artificial Intelligence (ETAI) 2023 - 2023
High-resolution ex vivo analysis of the degradation and osseointegration of Mg-xGd implant screws in 3D
Krüger D, Galli S, Zeller-Plumhoff B, Wieland D, Peruzzi N, Wiese B, Heuser P, Moosmann J, Wennerberg A, Willumeit-Römer R - Bioactive Materials - 2022
An active learning approach for the interactive and guided segmentation of tomography data
Kazimi B, Heuser P, Schluenzen F, Cwieka H, Krüger D, Zeller-Plumhoff B, Wieland F, Hammel J, Beckmann F, Moosmann J - Developments in X-Ray Tomography XIV - 2022
The XBI BioLab for life science experiments at the European XFEL
Han H, Round E, Schubert R, Gül Y, Makroczyová J, Meza D, Heuser P, Aepfelbacher M, Barák I, Betzel C, Fromme P, Kursula I, Nissen P, Tereschenko E, Schulz J, Uetrecht C, Ulicný J, Wilmanns M, Hajdu J, Lamzin V, Lorenzen K - International Union of Crystallography (IUCr) - 2021
Macromolecular model building over the web
Sobolev E, Heuser P, Lamzin V - Acta Crystallographica Section A Foundations and Advances - 2021
Scaling the U-net: segmentation of biodegradable bone implants in high-resolution synchrotron radiation microtomograms
Baltruschat I, Ćwieka H, Krüger D, Zeller-Plumhoff B, Schlünzen F, Willumeit-Römer R, Moosmann J, Heuser P - Scientific Reports - 2021
The accuracy of protein models automatically built into cryo-EM maps with ARP / wARP
Chojnowski G, Sobolev E, Heuser P, Lamzin V - International Union of Crystallography (IUCr) - 2021
The use of local structural similarity of distant homologues for crystallographic model building from a molecular-replacement solution
Chojnowski G, Choudhury K, Heuser P, Sobolev E, Pereira J, Oezugurel U, Lamzin V - International Union of Crystallography (IUCr) - 2020
A load frame for in situ tomography at PETRA III
Moosmann J, Wieland D, Zeller-Plumhoff B, Galli S, Krüger D, Ershov A, Lautner S, Sartori J, Dean M, Köhring S, Burmester H, Dose T, Peruzzi N, Wennerberg A, Willumeit-Römer R, Wilde F, Heuser P, Hammel J, Beckmann F - SPIE-Intl Soc Optical Eng - 2019
New ARP/wARP web service integrated into virtual computation frameworks
Sobolev E, Heuser P, Chojnowski G, Oezugurel U, Kantamneni S, Lamzin V - Acta Crystallographica Section A Foundations and Advances - 2019
West-Life: A Virtual Research Environment for structural biology
Morris C, Andreetto P, Banci L, Bonvin A, Chojnowski G, Cano L, Carazo J, Conesa P, Daenke S, Damaskos G, Giachetti A, Haley N, Hekkelman M, Heuser P, Joosten R, Kouřil D, Křenek A, Kulhánek T, Lamzin V, Nadzirin N, Perrakis A, Rosato A, Sanderson F, Segura J, Schaarschmidt J, Sobolev E, Traldi S, Trellet M, Velankar S, Verlato M, Winn M - Elsevier BV - 2019
