Helmholtz Imaging CONNECT

Project MONAI is a set of open-source, freely available collaborative frameworks built for accelerating research and clinical collaboration in Medical Imaging. The goal is to accelerate the pace of innovation and clinical translation by building a robust software framework that benefits nearly every level of medical imaging, deep learning research, …

In Helmholtz Imaging CONNECT
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MicrobeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation (microbeSEG)

microbeSEG is a deep learning-based tool for instance segmentation of roundish objects in 2D and 2D+t data, e.g., microbes. The microbeSEG workflow covers training data creation (with pre-labeling) or import, model training, model evaluation, and the final segmentation of the data. OMERO is used for a comprehensive data management. For …

In Helmholtz Imaging CONNECT
➤Modalities: 0 ➤Applications: 7 ➤Instruments: 0 ➤Experts: 4 ➤Labs: 0 ➤Centers: 2 ➤Facilities: 0

Solution

MONAI Label

MONAI Label is an intelligent image labeling and learning tool that uses AI assistance to reduce the time and effort of annotating new datasets. By utilizing user interactions, MONAI Label trains an AI model for a specific task and continuously learns and updates that model as it receives additional annotated …

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➤Modalities: 0 ➤Applications: 1 ➤Instruments: 0 ➤Experts: 0 ➤Labs: 0 ➤Centers: 0 ➤Facilities: 0

Solution

MorphoCluster

Efficient Annotation of Plankton images by Clustering

In Helmholtz Imaging CONNECT
➤Modalities: 0 ➤Applications: 2 ➤Instruments: 0 ➤Experts: 2 ➤Labs: 1 ➤Centers: 1 ➤Facilities: 0

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Multi-path Explanations Library (m-pax_lib)

This repository contains a framework which allows for enhanced model interpretability and model robustness. The framework utilizes interpretable disentangled representations for downstream-task prediction which are in a second step visualized and evaluated through a multipath-attribution mapping.

In Helmholtz Imaging CONNECT
➤Modalities: 0 ➤Applications: 1 ➤Instruments: 0 ➤Experts: 1 ➤Labs: 1 ➤Centers: 1 ➤Facilities: 0

Solutions