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MorphoCluster

Authors: Simon-Martin Schröder, Rainer Kiko

Keywords: Plankton, Imaging, Pelagic Imaging, Clustering, Annotation

https://github.com/morphocluster/morphocluster/

Efficient Annotation of Plankton images by Clustering

Publications

MorphoCluster: Efficient Annotation of Plankton Images by Clustering

Schröder S, Kiko R, Koch R - Sensors - 2020

10.3390/s20113060

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License

GPL

MorphoCluster in Helmholtz Imaging CONNECT:

Expert

Astrid Cornils

Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung - Bremerhaven

interesting im digitizing marine plankton samples, ZooScan, LOKI, UVP, stereo microscopy
looking for machine learning solutions to annotate plankton organisms and morphological structure to study eco-physiological traits

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Expert

Simon-Martin Schröder

Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung - Kiel

Computer Scienctist at Kiel University.

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Expert

Helmholtz Imaging Support

Helmholtz Imaging offers support for any imaging challenge, independent of the modality. If you do not find the expert here you are looking for, please don't hesitate to contact us!

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Application

Annotation

An annotation is extra information associated with a particular point in a document or other piece of information. It can be a note that includes a comment or explanation. Annotations are sometimes presented in the …

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Application

Pelagic Imaging

Pelagic imaging describes studying the ecosystem of the pelagic zone by means of images. Examples here include the studying of e.g. the growth and abundance of various species of plankton in the ocean to get …

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Center

GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel (GEOMAR)

GEOMAR Helmholtz Centre for Ocean Research Kiel is a world-wide leading institute of marine research. We investigate chemical, physical, biological and geological processes of the seafloor, oceans and ocean margins and their interactions with the …

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➤Applications: 24 ➤Facilities: 1 ➤Instruments: 5 ➤Labs: 6 ➤Modalities: 10 ➤Experts: 9 ➤Solutions: 1

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Lab

Pelagic Imaging Consortium (PIC)

The Pelagic Imaging Consortium gathers scientists from a number of Helmholtz centers (in particular from AWI, HEREON, GEOMAR, UFZ and KIT) interested in the imaging of all kinds of particles in the pelagic zone of …

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➤Applications: 2 ➤Facilities: 0 ➤Centers: 7 ➤Instruments: 5 ➤Modalities: 0 ➤Experts: 19 ➤Solutions: 1