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epifluorescence microscope

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Epi-Fluorescence Microscopy

Webb D, Brown C - Methods in Molecular Biology - 2012

10.1007/978-1-62703-056-4_2

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Chiththaka Chaturanga Devapriya Bandara Imihami Mudiyanselage

Helmholtz-Zentrum für Umweltforschung - Leipzig

I am an early career researcher with a strong interest in microscopy at the nanoscale and materials science with a background in Chemistry and Molecular biology. I am particularly interested in bactericidal surfaces, and understanding the bactericidal mechanism shown by …

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Helmholtz-Zentrum für Umweltforschung (UFZ)

Biodiversity, functioning ecosystems, clean water and intact soils all make up our natural resource base. In the face of global change, employees at the Helmholtz Centre for Environmental Research – UFZ are united by the …

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Modality

Fluorescence imaging

Fluorescence imaging is often used in a light microscopy setting and revolved around the use of either autofluorescent properties of the sample or fluorescent marker molecules. Hereby, specific wavelengths of an excitation source (lamp, LED …

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Solution

NnU-Net

When confronted with a new dataset, the application of AI-based segmentation methods is non-trivial. Substantial manual effort is required to optimize the network topology, preprocessing, training procedure and inference strategy to the task at hand. …

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ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud (ObiWan-Microbi)

ObiWan-Microbi: OMERO-based integrated Workflow for annotating Microbes in the Cloud

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ObiWan-Microbi is a toolkit collection for semi-automated segmentation and annotation of (biological) time-lapse image data in the cloud. It utilizes an OMERO image server for …

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