Helmholtz Imaging CONNECT

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Deborah Schmidt

Leading the Helmholtz Imaging Support Unit at the Max Delbrück Center for Molecular Medicine in Berlin (Technology Platform Image Data Analysis). Research software engineer. Trained media computer scientist, experience in molecular biology / basic research data analysis, human computer interaction, computer vision, deep learning, data visualization, generative graphics. Passionate about open science, frugal science, citizen science, decentralized systems.

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©Deborah Schmidt

Max-Delbrück-Centrum für Molekulare Medizin in der Helmholtz-Gemeinschaft

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Deborah Schmidt in Helmholtz Imaging CONNECT:

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Center

Max-Delbrück-Centrum für Molekulare Medizin in der Helmholtz-Gemeinschaft (MDC)

The Max Delbrück Center for Molecular Medicine is devoted to biomedical research with the aim of understanding the molecular basis of health and disease and translating findings as quickly as possible into clinical applications. Better …

In Helmholtz Imaging CONNECT
➤Applications: 13 ➤Facilities: 0 ➤Instruments: 0 ➤Labs: 4 ➤Modalities: 10 ➤Experts: 13 ➤Solutions: 7

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Lab

Helmholtz Imaging (HI)

Helmholtz Imaging (HI) brings scientists and engineers in the Helmholtz Association together to promote and develop imaging science and to foster synergies across imaging modalities and applications within the Helmholtz Association.

A significant amount of …

In Helmholtz Imaging CONNECT
➤Applications: 2 ➤Facilities: 0 ➤Centers: 5 ➤Instruments: 0 ➤Modalities: 0 ➤Experts: 24 ➤Solutions: 14

Lab

Image Data Analysis (IDA)

Pictures contain a wealth of scientific information. We build algorithms and other computational tools to efficiently extract and analyze data from images, which can help researchers see their data in whole new ways and make …

In Helmholtz Imaging CONNECT
➤Applications: 0 ➤Facilities: 0 ➤Centers: 2 ➤Instruments: 0 ➤Modalities: 0 ➤Experts: 3 ➤Solutions: 5

Lab

Pelagic Imaging Consortium (PIC)

The Pelagic Imaging Consortium gathers scientists from a number of Helmholtz centers (in particular from AWI, HEREON, GEOMAR, UFZ and KIT) interested in the imaging of all kinds of particles in the pelagic zone of …

In Helmholtz Imaging CONNECT
➤Applications: 2 ➤Facilities: 0 ➤Centers: 7 ➤Instruments: 5 ➤Modalities: 0 ➤Experts: 19 ➤Solutions: 1

Solution

Album

album is a decentralized distribution platform for solutions to specific scientific problems. It works across platforms, tools, and data domains and is designed to address limitations in reproducibility of scientific data software solutions and workflows, …

In Helmholtz Imaging CONNECT
➤Applications: 0 ➤Facilities: 0 ➤Centers: 1 ➤Instruments: 0 ➤Labs: 2 ➤Modalities: 0 ➤Experts: 3

Solution

CellSketch

CellSketch is used to collect masks and labels belonging to the same 3D scene into one project. The routines are primarily targeting but not limited to single cell datasets. All imported datasets are stored in …

In Helmholtz Imaging CONNECT
➤Applications: 0 ➤Facilities: 0 ➤Centers: 2 ➤Instruments: 5 ➤Labs: 2 ➤Modalities: 1 ➤Experts: 1

Solution

Earth-watch

Python package for rendering netCDF map over time as a video using PyVista.

In Helmholtz Imaging CONNECT
➤Applications: 1 ➤Facilities: 0 ➤Centers: 2 ➤Instruments: 0 ➤Labs: 2 ➤Modalities: 0 ➤Experts: 2

Solution

Image Challenges Album Catalog (album-image-challenges)

This collection of solutions brings together existing software solutions to recurring challenges along the imaging pipeline. Currently, it focuses mainly on visualization tasks, but will dynamically be extended by the Helmholtz Imaging Support & Engineering …

In Helmholtz Imaging CONNECT
➤Applications: 0 ➤Facilities: 0 ➤Centers: 1 ➤Instruments: 0 ➤Labs: 1 ➤Modalities: 0 ➤Experts: 1