PROF. Ralf Mikut
Karlsruhe Institute of Technology (KIT)
Institute for Automation and Applied Informatics (IAI)
Hermann-von-Helmholtz-Platz 1
76344 Eggenstein-Leopoldshafen
GERMANY
Analysis of images (2D/3D/3D+t) with a main focus on life science applications, deep learning, feature extraction and data analytics of image objects
Helmholtz Imaging Projects
2020: SATOMI - Tackling the segmentation and tracking challenges of growing colonies and microbial diversityPublications
A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction
Löffler K, Scherr T, Mikut R - Public Library of Science (PLoS) - 2021
Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy
Scherr T, Löffler K, Böhland M, Mikut R - Public Library of Science (PLoS) - 2020
An objective comparison of cell-tracking algorithms
Ulman V, Maška M, Magnusson K, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau H, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho S, Dufour A, Olivo-Marin J, Reyes-Aldasoro C, Solis-Lemus J, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht F, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C - Springer Science and Business Media LLC - 2017
Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos
Stegmaier J, Amat F, Lemon W, McDole K, Wan Y, Teodoro G, Mikut R, Keller P - Elsevier BV - 2016
Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks
Stegmaier J, Otte J, Kobitski A, Bartschat A, Garcia A, Nienhaus G, Strähle U, Mikut R - Public Library of Science (PLoS) - 2014
