Helmholtz Imaging CONNECT

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Tim Scherr

Institute for Automation and Applied Informatics

My research focusses on deep learning-based methods for cell segmentation.

Helmholtz Imaging Projects

2020: SATOMI - Tackling the segmentation and tracking challenges of growing colonies and microbial diversity

Send mail to Tim Scherr (tim.scherr@kit.edu)

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Karlsruher Institut für Technologie - Eggenstein-Leopoldshafen

Tim Scherr in Helmholtz Imaging CONNECT:

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Center

Karlsruher Institut für Technologie (KIT)

KIT is 'The Research University in the Helmholtz Association.' As one of the biggest science institutions in Europe, the only German University of Excellence with national large-scale research facilities combines a long university tradition with …

In Helmholtz Imaging CONNECT
➤Applications: 21 ➤Facilities: 8 ➤Instruments: 35 ➤Labs: 10 ➤Modalities: 57 ➤Experts: 20 ➤Solutions: 9

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Solution

MicrobeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation (microbeSEG)

microbeSEG is a deep learning-based tool for instance segmentation of roundish objects in 2D and 2D+t data, e.g., microbes. The microbeSEG workflow covers training data creation (with pre-labeling) or import, model training, model evaluation, and …

In Helmholtz Imaging CONNECT
➤Applications: 7 ➤Facilities: 0 ➤Centers: 2 ➤Instruments: 0 ➤Labs: 0 ➤Modalities: 0 ➤Experts: 4