Helmholtz Imaging CONNECT

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DR. Ella Bahry

Max Delbrueck Center (MDC)

Image analysis software and generic tools
Machine Learning
Microscopy analysis
3D rendering
Segmentation
Classification
Registration

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Max-Delbrück-Centrum für Molekulare Medizin in der Helmholtz-Gemeinschaft - Berlin

Ella Bahry in Helmholtz Imaging CONNECT:

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Center

Max-Delbrück-Centrum für Molekulare Medizin in der Helmholtz-Gemeinschaft (MDC)

The Max Delbrück Center for Molecular Medicine is devoted to biomedical research with the aim of understanding the molecular basis of health and disease and translating findings as quickly as possible into clinical applications. Better …

In Helmholtz Imaging CONNECT
➤Applications: 13 ➤Facilities: 0 ➤Instruments: 0 ➤Labs: 4 ➤Modalities: 10 ➤Experts: 13 ➤Solutions: 7

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Solution

Earth-watch

Python package for rendering netCDF map over time as a video using PyVista.

In Helmholtz Imaging CONNECT
➤Applications: 1 ➤Facilities: 0 ➤Centers: 2 ➤Instruments: 0 ➤Labs: 2 ➤Modalities: 0 ➤Experts: 2

Solution

FISH-colocalization (FISHcolocalization)

Python package for colocalization of RS-FISH results with either RS-FISH results (e.g from two image channels) 2D/3D, or with an image (only 2D for now).

In Helmholtz Imaging CONNECT
➤Applications: 0 ➤Facilities: 0 ➤Centers: 1 ➤Instruments: 0 ➤Labs: 0 ➤Modalities: 0 ➤Experts: 1

Solution

SIFT-registration-tool

2D image registration tool using CV2 SIFT.

In Helmholtz Imaging CONNECT
➤Applications: 1 ➤Facilities: 0 ➤Centers: 2 ➤Instruments: 0 ➤Labs: 2 ➤Modalities: 0 ➤Experts: 3