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quantification of microscopy data

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Quantification of microscopy data in Helmholtz Imaging CONNECT:

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Cell-ACDC: Analysis of Cell Division Cycle

A GUI-based Python framework for segmentation, tracking, cell cycle annotations and quantification of microscopy data.
 
Let's face it, when dealing with segmentation of microscopy data we often do not have time to check that …

In Helmholtz Imaging CONNECT
➤Applications: 4 ➤Facilities: 0 ➤Centers: 1 ➤Instruments: 5 ➤Labs: 1 ➤Modalities: 2 ➤Experts: 1
Solution
MicrobeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation (microbeSEG)

microbeSEG is a deep learning-based tool for instance segmentation of roundish objects in 2D and 2D+t data, e.g., microbes. The microbeSEG workflow covers training data creation (with pre-labeling) or import, model training, model evaluation, and …

In Helmholtz Imaging CONNECT
➤Applications: 7 ➤Facilities: 0 ➤Centers: 2 ➤Instruments: 0 ➤Labs: 0 ➤Modalities: 0 ➤Experts: 4
Solution
ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud (ObiWan-Microbi)

ObiWan-Microbi: OMERO-based integrated Workflow for annotating Microbes in the Cloud

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ObiWan-Microbi is a toolkit collection for semi-automated segmentation and annotation of (biological) time-lapse image data in the cloud. It utilizes an OMERO image server for …

In Helmholtz Imaging CONNECT
➤Applications: 5 ➤Facilities: 0 ➤Centers: 2 ➤Instruments: 2 ➤Labs: 0 ➤Modalities: 4 ➤Experts: 1

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