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Generate BDV XML datasets via BigStitcher (bdv-xml-importer)

Solution Creators: Deborah Schmidt

Keywords: bdv, bvv, bigstitcher

https://gitlab.com/album-app/catalogs/image-challenges/-/tree/main/solutions/data-management/bdv-xml-importer

This solution launches the dataset generator from BigStitcher, which can be used to create a BDV XML file for existing datasets or to convert the data into N5 or HDF5 datasets.

Resources

Hörl, D., Rojas Rusak, F., Preusser, F. et al. BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples. Nat Methods 16, 870–874 (2019).

10.1038/s41592-019-0501-0

Pietzsch, T., Saalfeld, S., Preibisch, S., & Tomancak, P. (2015). BigDataViewer: visualization and processing for large image data sets. Nature Methods, 12(6), 481–483.

10.1038/nmeth.3392

Solution from Album Catalog

This is a solution from an Album Catalog! To read how to install and use an Album Catalog, please have a look here. For instructions on how to use this solution, look here.

Album Catalog Solution

Solution automatically imported from the Album Catalog^? Image Challenges Album Catalog.